microblaze on XSV800

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I created and compiled a project to create bit file using the microblaze
EDK 3.2. I can successfully create the bit file combining both the HW/SW
streams and download it onto my XSV-800 board.
I have a couple of questions:

* However after I download the design onto the board, all output pins
continuously go high. Specifically I redirected the output on one of
one of the pushbuttons and even this pin is perpetually high. Has anybody
anything like this before.

* When I look up the ncd file generated on an fpga-editor, I notice that
the clock
distribution does not take place over the clock-distribution network on
the fpga, but instead on the long and short signal nets. Why is this the

Any help is greatly appreciated.

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