It sounds like you have an error in the schematic that is screwing up the netlist. Try running the "Design Rule Check" it should give you an indication of where the error is.
Just a comment: the last couple new versions of Orcad (9 & 10) have been terrible. In 9 the rubber banding of signals when ou move a part got screwed up, then in 10 it randomly drops connection dots all over the place. And here is the killer, twice now I have found errors in the netlist generated for the PCB layout. The connection looked fine in the schematic, and when I generated the netleist a second time the error was fixed. Fortunately my layout guy was sharp enough to wonder why there was an op-amp with only one of the inputs connected. Lately the things I have been working on have been small enough that I can take a couple hours to check the netlist manually, but soon I am going to have to do a large board and an very worried about the integrity of the netlist.
So I am looking around for new schematic tools. Does anybody have recomendations? I am considering Protel, just because I haven't heard anybody complain about it yet.
Ethan Petersen