I never had much luck cutting glass with those cheap cutters...but I always thought it was me, not the cutter.
Then one day I *had* to have a piece of dimensional glass. After shattering two or three old windows I had laying around, I hit on the idea of grabbing my diamond engraver (the kind shaped and sized like a pencil, which you use to scratch your initials and SSN into things likely to get stolen). It worked a charm. The edges of the cut are a little rough, but given that most panes are set into something, that's not usually an issue.
jak