High frequency is the key. The high current spikes you mention are caused by the voltage differential combined with the low ESR of the caps. There is a peak of current at the onset of switching which ramps down as the voltages equalize. Then the current is strictly the load current which will ramp up the voltage on the high side cap(s) and ramp down the voltage on the output and low side caps.
By using a high frequency the initial delta V on the caps is smaller, reducing the spike current. The two phase circuit will also help, but it quickly becomes impractical for anything other than a 2:1 divider. To work well over a 7 to 17 volt input range, I am planning to implement 2:1, 3:1 and 4:1 voltage ratios and may even use 2.5:1 although that would just be icing on the cake to boost the efficiency over a fairly narrow range of Vin (8.5 to 10 volts).