We're using an external 12 volt supply and one of these
which plugs into the mini-ITX processor board. Switched +12 and +5 come out of it and power our spectrosopy board (which has 5 more switchers and 3 linear regs of its own) and has power distribution for the hard drives. Seems to work.
This instrument is basically a PC, but we don't want it to look like a PC. Most PCs are wiring hairballs inside.
That AC powered fan is temporary. We'll use a temperature-controlled DC fan in the real rackmount box. The Kontron has a connector for that.
John