There are two options I can think of, off the top of my head.
1 - You can use a PCB etching kit, which will contain some light sensitive PCB material that you can draw your circuit on and then expose it and etch it. You should be able to get such a kit from an online electronics supplier or possibly even a local store.2 - There are some low cost PCB houses that could make the board for you. Some of these houses use custom software so that they can produce boards only produced with their tools. Others use standard Gerber plots to make the boards from. I have seen this topic come up in the newsgroups numerous times - try searching for this subject and you should get plenty of suggestions.
If you are concerned about signal integrity, as you mentioned reducing the inductive loops, etc, consider putting a ground plane on one of the layers of your PCB. I am assuming here that you will use a two layer board. With the use of a ground plane, the power circuitry can be somewhat arbitrary, just be sure to use bypass capacitors appropriately.