Turns out the issue I was seeing on the casing of my portable battery wasn't anything organic, which was a huge relief. I initially thougth it was some kind of residue or insect matter since it appeared suddenly even though the unit had been sitting on a clean desk for months.
I took the whole thing outside and saw that it had been sitting on the edge of a workbench that was near a galvanized steel bucket. The water from my cleaning process had dripped onto the desk and then onto the battery's surface, creating those dark markings. It was just mineral and oxidation from the metal components reacting with the moisture.
I've started keeping all my power storage units off concrete or metal surfaces where condensation or runoff could occur. A simple waterproof silicone mat has made a difference. No more mysterious spotting on my gear.