I'm starting to wonder the same thing. Of the four RPI2s I have, using pl2303 adapters, two seem to work fine and two don't. The problem is clearly associated with particular RPI2s, not the adapters. As it happens, those two hosts use SanDisk Extreme 32GB USB flash drives while the two hosts without problems either have no external storage or an old-fashioned mechanical hard drive. The failures are in the form of hard lockup on the USB side, requiring total disconnection to reset.
As it happens I'm using FreeBSD, not Linux, but the story seems otherwise similar.
I just ordered two FTDI adapters from Digi-Key, I hope my luck is better than yours!
Thanks for posting,
bob prohaska